Data & Setup

Caution

These materials are still under development

Workshop Attendees

If you are attending one of our workshops, we will provide a training environment with all of the required software and data.
If you want to setup your own computer to run the analysis demonstrated on this course, you can follow the instructions below.

Data

The data used in these materials is provided as a zip file. Download and unzip the folder to your Desktop to follow along with the materials.

Software

We use the Mamba package manager to install the necessary software.

See our separate software installation instructions page for how to install Mamba. Windows users are recommended to install WSL and follow the instructions for Linux.

Then, create a Mamba environment with the required packages:

mamba create -n gwas plink2 gcta gemma bcftools gsl